Its not showing up anywhere - I have to manually add after the job submission to the Job Properties ->Scripts->Post Job Script . I tried looking for the job file to check to se if this line was written to the job file - but was not able to locate the job file - do you where does the job file gets created ?
when your adding the extra line to the submission code, its going under this line: fileHandle = open( jobInfoFile, "w" ) ?
the location of the SubmitNukeToDealine.py is in your nuke path, so your getting the the changed file?
as for location of the ini files it writes, id find this line in the submit code: tempResults = CallDeadlineCommand( args )
add a print args to see where all the files are writing to.